species:   Fugra
pid:       PID0664
parent:    Fg-HN-milR29
paralog:   
locus:     CM000577.1:7772806-7772899
matures:   ['GUUGAACGAACCUUGGCCGAA', 'CGUCACGAUGCUCGCUCAACGU']
srr:       SRR2970501_1
genome:    /Users/jax/+Genomes/Fungal_genomes/Fugra.AACM00000000.2_scaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Wang2016-nz.SRR2970501_1.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Wang2016-nz.SRR2970501_1.cram CM000577.1:7772806-7772899

2 out of bounds
24 alignments
21 proper strand
19 stranded perfect matches

        ***********************                                ************************       
UGACAAUAUCGUUGAACGAACCUUGGCCGAACCUCUCUCACUCGAAAACCCGAACACACUAACCUCGUCACGAUGCUCGCUCAACGUGUUGGCG
...(((((.((((((.(((.(.((((.(((...........(((......)))...........))).).))).).))).)))))))))))...
----------GUUGAACGAACCUUGGCCGAA--------------------------------------------------------------- l=21 a=16 c
-----------------------------------------------------------------CGUCACGAUGCUCGCUCAACGU------- l=22 a=0 c*
----------GUUGAACGAACCUUGGCCGAA--------------------------------------------------------------- l=21 a=16 ma
-----------------------------------------------------------------CGUCACGAUGCUCGCUCAACGU------- l=22 a=0 ma*

--------UCGUUGAACGAACCUUGGCCGAA--------------------------------------------------------------- l=23 a=1 
----------GUUGAACGAACCUUGGCCGA---------------------------------------------------------------- l=20 a=1 
----------GUUGAACGAACCUUGGCCGAA--------------------------------------------------------------- l=21 a=16 (c,ma)
----------GUUaAACGAACCUUGGCCGAA--------------------------------------------------------------- l=21 a=1 
------------UGAACGAACCUUGGCCGAA--------------------------------------------------------------- l=19 a=1 
-----------------GAACCUUGGCCGAAaCU------------------------------------------------------------ l=17 a=1 

mb-01011
ax-1001011
ku-01
ss-111111101110
fn-111
